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Using genomic and proteomic tools to identify responses to effects of pollutants on zooplankton and fish
Event ID: 3a49c40a-bd32-11e9-8f49-000c29fb4a96
Parent Event ID: bd97ef5d-bfa6-11e9-8f49-000c29fb4a96
Event date: 2019-08-13T02:11:00
Station: P3 (NLEG07)
Location: 78° 43' 54" N , 34° 0' 35" E
Cruise number: 2019706
Cruise name: 2019 Seasonal Study Q3
Sampletype: Fish
Sampling protocol: Nansen Legacy sampling protocols version 4 section 11.4
Gear type: Campelen trawl
Bottom depth (m): 307.25

Person of Interest

Name: Anders Goksøyr
Email: anders.goksoyr@uib.no
Institution: University of Bergen

Show more metadata

Using genomic and proteomic tools to identify responses to effects of pollutants on zooplankton and fish
pi_name: Anders Goksøyr
Abstract
We will identify responses to pollutants in fish and zooplankton using toxicogenomic tools (transcriptomics, proteomics, metabolomics). Samples (tissue samples such as liver, gill, etc. from fish, or whole animal samples from zooplankton) from ecologically relevant species that have been exposed on board (T2-2.3) will be processed on board and analyzed in the lab at home institutes. Toxicogenomic data will be further processed using bioinformatic and mathematical modeling tools developed in the Digital Life Norway dCod 1.0 project (dcod.no). Data will be used as a basis for ecological risk assessment for different exposure scenarios.

pi_email: anders.goksoyr@uib.no
projectID: 2706730
pi_address: Department of Biological Sciences Environmental Toxicology Bergen
recordedBy: Nadja Brun and Fekadu Yadetie
pi_institution: UiB
Created: 2020-05-06T13:42:41
Modified: 2021-08-12T08:31:30
History: 2020-05-06T13:42:41Z: Initial read in of the log files. 2021-08-12T08:31:30Z: Standardising PI email and institutions
Source document: AeN_2019706_FishLiverAndCalanus_FekaduAndNadja_final.xlsx
statID: 107
end_date: 2019-08-18 00:00:00
end_time: 00:30:00
fixative: none
tissueType: liver
storageTemp: neg 80 C
recordNumber: pcod16_DMSO
scientificName: Boreogadus saida
Using genomic and proteomic tools to identify responses to effects of pollutants on zooplankton and fish
Event ID: 93d7a67a-b8f1-11e9-8f49-000c29fb4a96
Parent Event ID: bd97ef5d-bfa6-11e9-8f49-000c29fb4a96
Event date: 2019-08-13T02:11:00
Station: P3 (NLEG07)
Location: 78° 43' 54" N , 34° 0' 35" E
Cruise number: 2019706
Cruise name: 2019 Seasonal Study Q3
Sampletype: Fish
Sampling protocol: Nansen Legacy sampling protocols version 4 section 11.4
Gear type: Campelen trawl
Bottom depth (m): 307.25

Person of Interest

Name: Anders Goksøyr
Email: anders.goksoyr@uib.no
Institution: University of Bergen

Show more metadata

Using genomic and proteomic tools to identify responses to effects of pollutants on zooplankton and fish
pi_name: Anders Goksøyr
Abstract
We will identify responses to pollutants in fish and zooplankton using toxicogenomic tools (transcriptomics, proteomics, metabolomics). Samples (tissue samples such as liver, gill, etc. from fish, or whole animal samples from zooplankton) from ecologically relevant species that have been exposed on board (T2-2.3) will be processed on board and analyzed in the lab at home institutes. Toxicogenomic data will be further processed using bioinformatic and mathematical modeling tools developed in the Digital Life Norway dCod 1.0 project (dcod.no). Data will be used as a basis for ecological risk assessment for different exposure scenarios.

pi_email: anders.goksoyr@uib.no
projectID: 2706730
pi_address: Department of Biological Sciences Environmental Toxicology Bergen
recordedBy: Nadja Brun and Fekadu Yadetie
pi_institution: UiB
Created: 2020-05-06T13:42:41
Modified: 2021-08-12T08:31:30
History: 2020-05-06T13:42:41Z: Initial read in of the log files. 2021-08-12T08:31:30Z: Standardising PI email and institutions
Source document: AeN_2019706_FishLiverAndCalanus_FekaduAndNadja_final.xlsx
statID: 107
fixative: none
tissueType: liver
storageTemp: neg 80 C
recordNumber: pcod16_5g
scientificName: Boreogadus saida
Using genomic and proteomic tools to identify responses to effects of pollutants on zooplankton and fish
Event ID: 48912be3-b8f2-11e9-8f49-000c29fb4a96
Parent Event ID: bd97ef5d-bfa6-11e9-8f49-000c29fb4a96
Event date: 2019-08-13T02:11:00
Station: P3 (NLEG07)
Location: 78° 43' 54" N , 34° 0' 35" E
Cruise number: 2019706
Cruise name: 2019 Seasonal Study Q3
Sampletype: Fish
Sampling protocol: Nansen Legacy sampling protocols version 4 section 11.4
Gear type: Campelen trawl
Bottom depth (m): 307.25

Person of Interest

Name: Anders Goksøyr
Email: anders.goksoyr@uib.no
Institution: University of Bergen

Show more metadata

Using genomic and proteomic tools to identify responses to effects of pollutants on zooplankton and fish
pi_name: Anders Goksøyr
Abstract
We will identify responses to pollutants in fish and zooplankton using toxicogenomic tools (transcriptomics, proteomics, metabolomics). Samples (tissue samples such as liver, gill, etc. from fish, or whole animal samples from zooplankton) from ecologically relevant species that have been exposed on board (T2-2.3) will be processed on board and analyzed in the lab at home institutes. Toxicogenomic data will be further processed using bioinformatic and mathematical modeling tools developed in the Digital Life Norway dCod 1.0 project (dcod.no). Data will be used as a basis for ecological risk assessment for different exposure scenarios.

pi_email: anders.goksoyr@uib.no
projectID: 2706730
pi_address: Department of Biological Sciences Environmental Toxicology Bergen
recordedBy: Nadja Brun and Fekadu Yadetie
pi_institution: UiB
Created: 2020-05-06T13:42:41
Modified: 2021-08-12T08:31:30
History: 2020-05-06T13:42:41Z: Initial read in of the log files. 2021-08-12T08:31:30Z: Standardising PI email and institutions
Source document: AeN_2019706_FishLiverAndCalanus_FekaduAndNadja_final.xlsx
statID: 107
end_date: 2019-08-18 00:00:00
end_time: 00:30:00
fixative: none
tissueType: liver
storageTemp: neg 80 C
recordNumber: pcod16_DMSO
scientificName: Boreogadus saida
Using genomic and proteomic tools to identify responses to effects of pollutants on zooplankton and fish
Event ID: 51d6f7d2-c048-11e9-8f49-000c29fb4a96
Parent Event ID: bd97ef5d-bfa6-11e9-8f49-000c29fb4a96
Event date: 2019-08-13T02:11:00
Station: P3 (NLEG07)
Location: 78° 43' 54" N , 34° 0' 35" E
Cruise number: 2019706
Cruise name: 2019 Seasonal Study Q3
Sampletype: Fish
Sampling protocol: Nansen Legacy sampling protocols version 4 section 11.4
Gear type: Campelen trawl
Bottom depth (m): 307.25

Person of Interest

Name: Anders Goksøyr
Email: anders.goksoyr@uib.no
Institution: University of Bergen

Show more metadata

Using genomic and proteomic tools to identify responses to effects of pollutants on zooplankton and fish
pi_name: Anders Goksøyr
Abstract
We will identify responses to pollutants in fish and zooplankton using toxicogenomic tools (transcriptomics, proteomics, metabolomics). Samples (tissue samples such as liver, gill, etc. from fish, or whole animal samples from zooplankton) from ecologically relevant species that have been exposed on board (T2-2.3) will be processed on board and analyzed in the lab at home institutes. Toxicogenomic data will be further processed using bioinformatic and mathematical modeling tools developed in the Digital Life Norway dCod 1.0 project (dcod.no). Data will be used as a basis for ecological risk assessment for different exposure scenarios.

pi_email: anders.goksoyr@uib.no
projectID: 2706730
pi_address: Department of Biological Sciences Environmental Toxicology Bergen
recordedBy: Nadja Brun and Fekadu Yadetie
pi_institution: UiB
Created: 2020-05-06T13:42:41
Modified: 2021-08-12T08:31:30
History: 2020-05-06T13:42:41Z: Initial read in of the log files. 2021-08-12T08:31:30Z: Standardising PI email and institutions
Source document: AeN_2019706_FishLiverAndCalanus_FekaduAndNadja_final.xlsx
statID: 107
end_date: 2019-08-18 00:00:00
end_time: 00:30:00
fixative: none
tissueType: liver
storageTemp: neg 80 C
recordNumber: pcod16_BaP.low
scientificName: Boreogadus saida
Fish tissue samples
Event ID: 61e718ab-6fe4-11e9-89d6-a0481c9e7d26
Parent Event ID: 85eebb85-9b7c-11e8-b0bf-8c164557e466
Event date: 2019-08-13T02:11:00
Station: P3 (NLEG07)
Location: 78° 43' 54" N , 34° 0' 35" E
Cruise number: 2019706
Cruise name: 2019 Seasonal Study Q3
Sampletype: Tissue
Sampling protocol: Nansen Legacy Sampling Protocols Version 4, chapters 11.1 and 11.3.
Gear type: Campelen trawl
Bottom depth (m): 307.25

Person of Interest

Name: Sissel Jentoft
Email: sissel.jentoft@ibv.uio.no
Institution: University of Oslo, Department of Biosciences

Show more metadata

Fish tissue samples
pi_name: Sissel Jentoft
Abstract
This data set contains tissue samples of polar cod, Atlantic cod and capelin for genomic analysis.

pi_email: sissel.jentoft@ibv.uio.no
projectID: The Nansen Legacy Project
pi_address: Sissel Jentoft, Department of Biosciences, University of Oslo, PO Box 1066 Blindern, N-0316 Oslo, Norway
recordedBy: Siv Hoff and Leif Chr. Stige
pi_institution: University of Oslo
Created: 2020-05-06T13:42:40
Modified: 2023-01-10T13:04:06
History: 2020-05-06T13:42:40Z: Initial read in of the log files. 2021-08-12T12:37:56Z: Standardising PI email and institutions 2023-01-10T13:04:06Z: Old parent wasnt logged
Source document: AeN_SCQ3_metadata_unikid_2019_fish_siv_16.8.2019_clean.xlsx
statID: 107
end_date: 2019-08-13 00:00:00
end_time: 02:26:00
fixative: EtOH
tissueType: muscle
storageTemp: neg 80 C
recordNumber: polcod88
scientificName: Boreogadus saida
maximumDepthInMeters: 307
minimumDepthInMeters: 307
Fish tissue samples
Event ID: 61e718ac-6fe4-11e9-89d6-a0481c9e7d26
Parent Event ID: 85eebb85-9b7c-11e8-b0bf-8c164557e466
Event date: 2019-08-13T02:11:00
Station: P3 (NLEG07)
Location: 78° 43' 54" N , 34° 0' 35" E
Cruise number: 2019706
Cruise name: 2019 Seasonal Study Q3
Sampletype: Tissue
Sampling protocol: Nansen Legacy Sampling Protocols Version 4, chapters 11.1 and 11.3.
Gear type: Campelen trawl
Bottom depth (m): 307.25

Person of Interest

Name: Sissel Jentoft
Email: sissel.jentoft@ibv.uio.no
Institution: University of Oslo, Department of Biosciences

Show more metadata

Fish tissue samples
pi_name: Sissel Jentoft
Abstract
This data set contains tissue samples of polar cod, Atlantic cod and capelin for genomic analysis.

pi_email: sissel.jentoft@ibv.uio.no
projectID: The Nansen Legacy Project
pi_address: Sissel Jentoft, Department of Biosciences, University of Oslo, PO Box 1066 Blindern, N-0316 Oslo, Norway
recordedBy: Siv Hoff and Leif Chr. Stige
pi_institution: University of Oslo
Created: 2020-05-06T13:42:40
Modified: 2023-01-10T13:04:06
History: 2020-05-06T13:42:40Z: Initial read in of the log files. 2021-08-12T12:37:56Z: Standardising PI email and institutions 2023-01-10T13:04:06Z: Old parent wasnt logged
Source document: AeN_SCQ3_metadata_unikid_2019_fish_siv_16.8.2019_clean.xlsx
statID: 107
end_date: 2019-08-13 00:00:00
end_time: 02:26:00
fixative: EtOH
tissueType: gill
storageTemp: neg 80 C
recordNumber: polcod88
scientificName: Boreogadus saida
maximumDepthInMeters: 307
minimumDepthInMeters: 307
Effects of changes in species composition and distribution on contaminant food web accumulation
Event ID: 1bef8135-bb6e-11e9-8f49-000c29fb4a96
Parent Event ID: 50945f66-c4bb-11e9-8f49-000c29fb4a96
Event date: 2019-08-13T02:11:00
Station: P3 (NLEG07)
Location: 78° 43' 54" N , 34° 0' 35" E
Cruise number: 2019706
Cruise name: 2019 Seasonal Study Q3
Sampletype: Fish
Sampling protocol: Nansen Legacy sampling protocols version 4 section 258
Gear type: Campelen trawl
Bottom depth (m): 307.25

Person of Interest

Name: Katrine Borgå
Email: katrine.borga@ibv.uio.no
Institution: University of Oslo

Show more metadata

Effects of changes in species composition and distribution on contaminant food web accumulation
pi_name: Katrine Borgå
Abstract
Work description As changes in temperature and sea ice distribution and thickness is expected in the region of interest, the energy transfer processes in the food web are expected to be changed compared to previous decades. Zooplankton and fish samples will be collected focusing on the process study cruises. From these, chemicals representing lipid soluble and protein associated contaminants will be analyzed, in addition to dietary descriptors to trace energy source (stable isotopes and lipid analyses). This will be repeated in the different seasons to interpret the annual dynamics of contaminant accumulation and transfer in the food web related to energy use and availability. So far, seasonal food web data are only available from Arctic fjords. At the UiO stable isotope lab, we will measure bulk C, H, N, O and S in organic material, and thus the ratios between lipid/protein/carbohydrate will be analyzed in small amounts of sample without extraction to assess the proximate biochemical composition. Model predictions of climate change effect on food web accumulation of contaminants include reduced accumulation due to predicted reduction in lipid storage. Bioaccumulation changes due to altered dietary composition is predicted to have less influence than the predicted lower lipid content. These predictions will be tested in the present task. A similar approach of sampling the central Barents Sea pelagic food web was taken in May 1998 (however, only with bulk stable isotope analyses of 13C and 15N), which allows a thorough comparison between the environmental states two decades apart. (From Nansen Legacy implementation plan)

pi_email: Katrine.borga@ibv.uio.no
projectID: RCN # 276730
pi_address: Kristine Bonnevieshus, Blindernveien, University of Oslo
recordedBy: Julia Giebichenstein, Håvard N. Liholt, Ane Haarr
pi_institution: University of Oslo
Created: 2020-05-06T13:42:09
Modified: 2021-08-12T09:34:40
History: 2020-05-06T13:42:09Z: Initial read in of the log files. 2021-08-12T09:34:40Z: Standardising PI email and institutions
Source document: AeN_2019706_FishEcotox_JuliaGiebichenstein.xlsx
sex: F
statID: 107
end_date: 2019-08-13 00:00:00
end_time: 02:26:00
tissueType: otholits
storageTemp: neg 20 C
recordNumber: PC45
weightInGrams: 35
scientificName: Boreogadus saida
gonadWeightInGrams: 1
liverWeightInGrams: 2
maximumDepthInMeters: 307
minimumDepthInMeters: 307
somaticWeightInGrams: 30
Effects of changes in species composition and distribution on contaminant food web accumulation
Event ID: a0f23c5c-bd35-11e9-8f49-000c29fb4a96
Parent Event ID: 50945f66-c4bb-11e9-8f49-000c29fb4a96
Event date: 2019-08-13T02:11:00
Station: P3 (NLEG07)
Location: 78° 43' 54" N , 34° 0' 35" E
Cruise number: 2019706
Cruise name: 2019 Seasonal Study Q3
Sampletype: Fish
Sampling protocol: Nansen Legacy sampling protocols version 4 section 390
Gear type: Campelen trawl
Bottom depth (m): 307.25

Person of Interest

Name: Katrine Borgå
Email: katrine.borga@ibv.uio.no
Institution: University of Oslo

Show more metadata

Effects of changes in species composition and distribution on contaminant food web accumulation
pi_name: Katrine Borgå
Abstract
Work description As changes in temperature and sea ice distribution and thickness is expected in the region of interest, the energy transfer processes in the food web are expected to be changed compared to previous decades. Zooplankton and fish samples will be collected focusing on the process study cruises. From these, chemicals representing lipid soluble and protein associated contaminants will be analyzed, in addition to dietary descriptors to trace energy source (stable isotopes and lipid analyses). This will be repeated in the different seasons to interpret the annual dynamics of contaminant accumulation and transfer in the food web related to energy use and availability. So far, seasonal food web data are only available from Arctic fjords. At the UiO stable isotope lab, we will measure bulk C, H, N, O and S in organic material, and thus the ratios between lipid/protein/carbohydrate will be analyzed in small amounts of sample without extraction to assess the proximate biochemical composition. Model predictions of climate change effect on food web accumulation of contaminants include reduced accumulation due to predicted reduction in lipid storage. Bioaccumulation changes due to altered dietary composition is predicted to have less influence than the predicted lower lipid content. These predictions will be tested in the present task. A similar approach of sampling the central Barents Sea pelagic food web was taken in May 1998 (however, only with bulk stable isotope analyses of 13C and 15N), which allows a thorough comparison between the environmental states two decades apart. (From Nansen Legacy implementation plan)

pi_email: Katrine.borga@ibv.uio.no
projectID: RCN # 276730
pi_address: Kristine Bonnevieshus, Blindernveien, University of Oslo
recordedBy: Julia Giebichenstein, Håvard N. Liholt, Ane Haarr
pi_institution: University of Oslo
Created: 2020-05-06T13:42:09
Modified: 2021-08-12T09:34:40
History: 2020-05-06T13:42:09Z: Initial read in of the log files. 2021-08-12T09:34:40Z: Standardising PI email and institutions
Source document: AeN_2019706_FishEcotox_JuliaGiebichenstein.xlsx
sex: F
statID: 107
end_date: 2019-08-13 00:00:00
end_time: 02:26:00
tissueType: muscle
storageTemp: neg 80 C
recordNumber: PC45
weightInGrams: 35
scientificName: Boreogadus saida
gonadWeightInGrams: 1
liverWeightInGrams: 2
maximumDepthInMeters: 307
minimumDepthInMeters: 307
somaticWeightInGrams: 30
Fish tissue samples
Event ID: 61e7171c-6fe4-11e9-89d6-a0481c9e7d26
Parent Event ID: 85eebb7b-9b7c-11e8-b0bf-8c164557e466
Event date: 2019-08-13T02:11:00
Station: P3 (NLEG07)
Location: 78° 43' 54" N , 34° 0' 35" E
Cruise number: 2019706
Cruise name: 2019 Seasonal Study Q3
Sampletype: Tissue
Sampling protocol: Nansen Legacy Sampling Protocols Version 4, chapters 11.1 and 11.3.
Gear type: Campelen trawl
Bottom depth (m): 307.25

Person of Interest

Name: Sissel Jentoft
Email: sissel.jentoft@ibv.uio.no
Institution: University of Oslo, Department of Biosciences

Show more metadata

Fish tissue samples
pi_name: Sissel Jentoft
Abstract
This data set contains tissue samples of polar cod, Atlantic cod and capelin for genomic analysis.

pi_email: sissel.jentoft@ibv.uio.no
projectID: The Nansen Legacy Project
pi_address: Sissel Jentoft, Department of Biosciences, University of Oslo, PO Box 1066 Blindern, N-0316 Oslo, Norway
recordedBy: Siv Hoff and Leif Chr. Stige
pi_institution: University of Oslo
Created: 2020-05-06T13:42:40
Modified: 2023-01-10T13:04:06
History: 2020-05-06T13:42:40Z: Initial read in of the log files. 2021-08-12T12:37:56Z: Standardising PI email and institutions 2023-01-10T13:04:06Z: Old parent wasnt logged
Source document: AeN_SCQ3_metadata_unikid_2019_fish_siv_16.8.2019_clean.xlsx
statID: 107
end_date: 2019-08-13 00:00:00
end_time: 02:26:00
fixative: EtOH
tissueType: gill
storageTemp: neg 80 C
recordNumber: polcod78
scientificName: Boreogadus saida
maximumDepthInMeters: 307
minimumDepthInMeters: 307
Fish tissue samples
Event ID: f63dbef8-6fe4-11e9-89d6-a0481c9e7d26
Parent Event ID: 85eebb7b-9b7c-11e8-b0bf-8c164557e466
Event date: 2019-08-13T02:11:00
Station: P3 (NLEG07)
Location: 78° 43' 54" N , 34° 0' 35" E
Cruise number: 2019706
Cruise name: 2019 Seasonal Study Q3
Sampletype: Tissue
Sampling protocol: Nansen Legacy Sampling Protocols Version 4, chapters 11.1 and 11.3.
Gear type: Campelen trawl
Bottom depth (m): 307.25

Person of Interest

Name: Sissel Jentoft
Email: sissel.jentoft@ibv.uio.no
Institution: University of Oslo, Department of Biosciences

Show more metadata

Fish tissue samples
pi_name: Sissel Jentoft
Abstract
This data set contains tissue samples of polar cod, Atlantic cod and capelin for genomic analysis.

pi_email: sissel.jentoft@ibv.uio.no
projectID: The Nansen Legacy Project
pi_address: Sissel Jentoft, Department of Biosciences, University of Oslo, PO Box 1066 Blindern, N-0316 Oslo, Norway
recordedBy: Siv Hoff and Leif Chr. Stige
pi_institution: University of Oslo
Created: 2020-05-06T13:42:40
Modified: 2023-01-10T13:04:06
History: 2020-05-06T13:42:40Z: Initial read in of the log files. 2021-08-12T12:37:56Z: Standardising PI email and institutions 2023-01-10T13:04:06Z: Old parent wasnt logged
Source document: AeN_SCQ3_metadata_unikid_2019_fish_siv_16.8.2019_clean.xlsx
statID: 107
end_date: 2019-08-13 00:00:00
end_time: 02:26:00
fixative: None
tissueType: otoliths
storageTemp: Room temp
recordNumber: polcod78
scientificName: Boreogadus saida
maximumDepthInMeters: 307
minimumDepthInMeters: 307

Person of interest

Institution

Using genomic and proteomic tools to identify responses to effects of pollutants on zooplankton and fish

Using genomic and proteomic tools to identify responses to effects of pollutants on zooplankton and fish

Abstract

Using genomic and proteomic tools to identify responses to effects of pollutants on zooplankton and fish

Using genomic and proteomic tools to identify responses to effects of pollutants on zooplankton and fish

Abstract

Using genomic and proteomic tools to identify responses to effects of pollutants on zooplankton and fish

Using genomic and proteomic tools to identify responses to effects of pollutants on zooplankton and fish

Abstract

Using genomic and proteomic tools to identify responses to effects of pollutants on zooplankton and fish

Using genomic and proteomic tools to identify responses to effects of pollutants on zooplankton and fish

Abstract

Fish tissue samples

Fish tissue samples

Abstract

Fish tissue samples

Fish tissue samples

Abstract

Effects of changes in species composition and distribution on contaminant food web accumulation

Effects of changes in species composition and distribution on contaminant food web accumulation

Abstract

Effects of changes in species composition and distribution on contaminant food web accumulation

Effects of changes in species composition and distribution on contaminant food web accumulation

Abstract

Fish tissue samples

Fish tissue samples

Abstract

Fish tissue samples

Fish tissue samples

Abstract

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Cruise name

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Using genomic and proteomic tools to identify responses to effects of pollutants on zooplankton and fish

Abstract

Using genomic and proteomic tools to identify responses to effects of pollutants on zooplankton and fish

Abstract

Using genomic and proteomic tools to identify responses to effects of pollutants on zooplankton and fish

Abstract

Using genomic and proteomic tools to identify responses to effects of pollutants on zooplankton and fish

Abstract

Fish tissue samples

Abstract

Fish tissue samples

Abstract

Effects of changes in species composition and distribution on contaminant food web accumulation

Abstract

Effects of changes in species composition and distribution on contaminant food web accumulation

Abstract

Fish tissue samples

Abstract

Fish tissue samples

Abstract

Links

Cruise name

Gear Type

Sample type

Sample depth (m)